updated the percolation script

jobscript/benchmarks/percolationgpu.sh

@@ -7,6 +7,8 @@ MPIRUN=""
 export CUDA_VISIBLE_DEVICES=${VISABLE_DEVICE}
 
 EXECUTABLE=Percolation
+FULL_EXECUTABLE="${BUILD_DIR}/${DIR}/${EXECUTABLE}"
+FULL_ARGUMENT="${BUILD_DIR}/${DIR}/${ARGUMENT}"
 
 dev_name=$(nvidia-smi --id=${VISABLE_DEVICE} --query-gpu=gpu_name --format=csv,noheader 2> /dev/null | tr -d '[:blank:]' || echo "GPU_${VISABLE_DEVICE}")
 
@@ -16,13 +18,13 @@ basename_exe=$(basename ${EXECUTABLE})
 profile_file="ncuprofile_channelflow_${basename_exe}_${dev_name}"
 
 # with profling
-cmdChannelFlow="${PROFILING} -o $profile_file $MPIRUN $EXECUTABLE ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.timeSteps=2 -NumericalSetup.useParticles=false"
+cmdChannelFlow="${PROFILING} -o $profile_file $MPIRUN $FULL_EXECUTABLE $FULL_ARGUMENT -NumericalSetup.timeSteps=2 -NumericalSetup.useParticles=false"
 export DB_FILE="gpu_profile_channel_flow_${dev_name}.sqlite3"
 echo "Runing $cmdChannelFlow"
 $cmdChannelFlow && ncu -i "${profile_file}.ncu-rep" --csv --page=raw > "$(basename -s ".ncu-rep" ${profile_file})".csv || echo "${cmdChannelFlow} failed"
 
 # without profling
-cmdChannelFlow="$MPIRUN $executable ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.useParticles=false"
+cmdChannelFlow="$MPIRUN $FULL_EXECUTABLE $FULL_ARGUMENT -NumericalSetup.useParticles=false"
 echo "Runing $cmdChannelFlow"
 export DB_FILE="gpu_benchmark_channel_flow_${dev_name}.sqlite3"
 $cmdChannelFlow || echo "$cmdChannelFlow failed"
@@ -31,13 +33,13 @@ $cmdChannelFlow || echo "$cmdChannelFlow failed"
 profile_file="ncuprofile_percolation_${basename_exe}_${dev_name}"
 
 # with profling
-cmdPercolation="${PROFILING} -o $profile_file $MPIRUN $EXECUTABLE ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.timeSteps=2"
+cmdPercolation="${PROFILING} -o $profile_file $MPIRUN $FULL_EXECUTABLE $FULL_ARGUMENT -NumericalSetup.timeSteps=2"
 export DB_FILE="gpu_profile_percolation_${dev_name}.sqlite3"
 echo "Runing $cmdPercolation"
 $cmdPercolation && ncu -i "${profile_file}.ncu-rep" --csv --page=raw > "$(basename -s ".ncu-rep" ${profile_file})".csv || echo "${cmdPercolation} failed"
 
 # without profling
-cmdPercolation="$MPIRUN $executable ${BUILD_DIR}/${DIR}/$ARGUMENT"
-echo "Runing cmdPercolation"
+cmdPercolation="$MPIRUN $FULL_EXECUTABLE $FULL_ARGUMENT"
+echo "Runing $cmdPercolation"
 export DB_FILE="gpu_benchmark_percolation_${dev_name}.sqlite3"
 $cmdPercolation || echo "$cmdPercolation failed"