added a new benchmark

benchmarks.json

@@ -55,6 +55,17 @@
                 "!reference [.export_variables, before_script]",
                 "!reference [.upload, script]"
             ]
+        },
+        {
+            "name":"percolationgpu",
+            "type": "GPU",
+            "buildpath": "apps/benchmarks/Percolation",
+            "jobscript" : "jobscript/benchmarks/percolationgpu.sh",
+            "datafile":  "gpu_benchmark_*.sqlite3",
+            "processingtype": "",
+            "branch_regex": "",
+            "project_id_regex": "kemmler/particle_coupling_GPU",
+            "after_script": [ ]
         }
     ]
 }

jobscript/benchmarks/percolationgpu.sh

+DIR='apps/benchmarks/Percolation'
+PROFILING="ncu --set=full"
+ARGUMENT="benchmark.prm"
+CORES=$(nproc --all)
+MPIRUN=""
+
+export CUDA_VISIBLE_DEVICES=${VISABLE_DEVICE}
+
+EXECUTABLE=Percolation
+
+dev_name=$(nvidia-smi --id=${VISABLE_DEVICE} --query-gpu=gpu_name --format=csv,noheader 2> /dev/null | tr -d '[:blank:]' || echo "GPU_${VISABLE_DEVICE}")
+
+
+# first test case channelflow
+basename_exe=$(basename ${EXECUTABLE})
+profile_file="ncuprofile_channelflow_${basename_exe}_${dev_name}"
+
+# with profling
+cmdChannelFlow="${PROFILING} -o $profile_file $MPIRUN $EXECUTABLE ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.timeSteps=2 -NumericalSetup.useParticles=false"
+export DB_FILE="gpu_profile_channel_flow_${dev_name}.sqlite3"
+echo "Runing $cmdChannelFlow"
+$cmdChannelFlow && ncu -i "${profile_file}.ncu-rep" --csv --page=raw > "$(basename -s ".ncu-rep" ${profile_file})".csv || echo "${cmdChannelFlow} failed"
+
+# without profling
+cmdChannelFlow="$MPIRUN $executable ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.useParticles=false"
+echo "Runing $cmdChannelFlow"
+export DB_FILE="gpu_benchmark_channel_flow_${dev_name}.sqlite3"
+$cmdChannelFlow || echo "$cmdChannelFlow failed"
+
+# second test case percolation
+profile_file="ncuprofile_percolation_${basename_exe}_${dev_name}"
+
+# with profling
+cmdPercolation="${PROFILING} -o $profile_file $MPIRUN $EXECUTABLE ${BUILD_DIR}/${DIR}/$ARGUMENT -NumericalSetup.timeSteps=2"
+export DB_FILE="gpu_profile_percolation_${dev_name}.sqlite3"
+echo "Runing $cmdPercolation"
+$cmdPercolation && ncu -i "${profile_file}.ncu-rep" --csv --page=raw > "$(basename -s ".ncu-rep" ${profile_file})".csv || echo "${cmdPercolation} failed"
+
+# without profling
+cmdPercolation="$MPIRUN $executable ${BUILD_DIR}/${DIR}/$ARGUMENT"
+echo "Runing cmdPercolation"
+export DB_FILE="gpu_benchmark_percolation_${dev_name}.sqlite3"
+$cmdPercolation || echo "$cmdPercolation failed"